PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g038020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 344aa    MW: 39070.9 Da    PI: 5.142
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g038020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.11.6e-071203655
         G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                    m+v  Lt+e+v SHLQkYR+
  Csa13g038020.1  1 MNVSYLTRENVTSHLQKYRI 20
                    99*****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-7124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MNVSYLTREN VTSHLQKYRI FLRKVADQGL MSIMSARSID SMFRQTHIKE LYFNRYTPST  60
SLCDTSLNNR SFYSKPGQGF GQSRLLSTTR EPPVRFNQMP YNYMNRSSTY ETHHVGSGSN  120
LTLPIQGNLS FANQPSQNEE RRSFFEPPVM ANKIGQTSQV HGFGKLGPSA INNFNNNIMS  180
SFESFTPNQP GLGHFSYGMQ SFLNNENTAY NPEPHANATT QPNLELPQLE DLSVYNDLGK  240
TNELLYNINN FQFDHNKQQQ GQEASFVNIN EGHYNEEIVN TFSAPATNHT FAAPEMNPPS  300
FNTKPNQNQE QDANQDISDW SFLDPQDLVD DDFMNSLFNN DMN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g038020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491325.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP51e-165ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A178UM441e-164A0A178UM44_ARATH; RR21
STRINGXP_010491325.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-160response regulator 21