PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g019650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 485aa    MW: 53551.3 Da    PI: 4.5325
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g019650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.5e-36281202103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++e++sws+ +nsfvv++  ef+k +LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  Csa13g019650.1  28 FLSKTYDMVDDPLTNEVVSWSSGNNSFVVWNVPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQLLKS 113
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  Csa13g019650.1 114 ISRRKTS 120
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.17E-3423117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.8E-3824117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5824117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3028117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MESVRESAPS ANSNTPTIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWNVP  60
EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKQL LKSISRRKTS  120
HVQQNQQQTQ VQNSSVGACV EVGKFGLEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ  180
NVGQKVQVME QRQQQMMSFL AKAVQSPGFL NQLVQQNNDG SRQIPGSNKK RRLPGDEQEN  240
CGTHGANGLN RQIVRYQPSI NEAAQNMLRQ FLSPSSSPQY ESVSNNSDSF LLGDVPSSNS  300
VDNGNPSNRV SEVTLAEVSP IPAPSATNQV PEVNVAHHPQ PGLVQPILGS SLAQGVAPAA  360
SWSPESDLVG CETGNGECFD PIMAALDAFE GDAISPEGEG KMNELLDGVP KLPGVQDPFW  420
EQFFSDESQA IGDTDEILSG SVENNSDMVV EQEPPTTNEW SRNQQQMNYL TEQMGLLSSE  480
AQRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-262312015123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g019650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY140680.0Y14068.1 Arabidopsis thaliana mRNA for heat shock factor 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453856.10.0PREDICTED: heat stress transcription factor A-1b
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLR0FKX10.0R0FKX1_9BRAS; Uncharacterized protein
STRINGXP_010453856.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]