PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g017980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 319aa MW: 36647.7 Da PI: 7.4049 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.2e-18 | 118 | 170 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Csa13g017980.1 118 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 170 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.3 | 3.1e-41 | 116 | 207 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+ eqv++LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++el Csa13g017980.1 116 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELV 207 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.38E-19 | 108 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-17 | 115 | 176 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.552 | 116 | 172 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.40E-15 | 117 | 173 | No hit | No description |
Pfam | PF00046 | 3.3E-15 | 118 | 170 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-19 | 120 | 180 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 143 | 152 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 147 | 170 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 152 | 168 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.7E-15 | 172 | 211 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MYMYKEGRNN ISNNQEGLRL EMAFPQHGFM FQQLHEDNTH HLPSPTSLPS CPPHLFYGGG 60 GGNYMMNRSM SFTGVPDHHH NLTQKSPTTT NNMNDQDQVG EEDNLSDDGS HMMLGEKKKR 120 LNLEQVRALE KSFELGNKLE PERKMQLAKA LGLQPRQIAI WFQNRRARWK TKQLERDYDS 180 LKKQFDVLKS DNDSLLAHNK KLHAELVALK KHDRKESAKI KRELAEASWS NNGSTENNHN 240 NNTSDINHVS MIKDLFPSSI RSATATATTT STHIDHRMVQ EQDQGFCNMF NGIDETTSAS 300 YWAWPDQQQQ HHNHHQFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 172 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g017980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229364 | 0.0 | AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06. | |||
GenBank | BT044059 | 0.0 | BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010453644.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT7 | ||||
Swissprot | Q00466 | 0.0 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | R0FGQ4 | 0.0 | R0FGQ4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010453644.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 1e-160 | homeobox 3 |