PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g017150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 320aa MW: 36947.4 Da PI: 7.4944 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.2 | 1.8e-20 | 79 | 161 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ + GF+vrk++ + + ++++++ ++vCskeg+r+e++++ ++ +++ tr+gC+a+++ ++k++++++ ++e++HnH+l+ Csa13g017150.1 79 YQKYGGSHGFDVRKQRRTIK--KEKVVRLRYVCSKEGYRKETNDE---KSYSQPITRCGCNAHMTCYLQKNERYKIVSFEQNHNHDLF 161 9************9986665..7779**************98777...999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-17 | 78 | 161 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MENSYISEDF SPKEDYDSIS VDTASVSESV EKEDNIANNE NYVQTEEVVV LEANKESELK 60 DELCIGMEFS SDETAHTTYQ KYGGSHGFDV RKQRRTIKKE KVVRLRYVCS KEGYRKETND 120 EKSYSQPITR CGCNAHMTCY LQKNERYKIV SFEQNHNHDL FSFAGILCRH ALKVLDKKNV 180 RRIPSTYILT RWSKEAKTRR ISYYHPKTLN ETEKQSIGRR YSHICRTFRE IASVAADHIE 240 LTLCANEDAI QLLRKLEEKK KELVKANAWM PQSSDVGLVE EEEEVEDKEV PNARGIKRKA 300 SVGRPKNQKE YDKSYGGPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g017150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456530.1 | 1e-106 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | V4M602 | 8e-65 | V4M602_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_010456530.1 | 1e-106 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6200 | 6 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-14 | FAR1 family protein |