PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g012990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 834aa MW: 92028.3 Da PI: 6.2356 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.2e-19 | 15 | 73 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Csa12g012990.1 15 KYVRYTPEQVEALERLYNDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73 5679*****************************************************97 PP | |||||||
2 | START | 193.9 | 7.7e-61 | 159 | 367 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +a e+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+dk++W++++++ ++++v+s++ g+l+l+ Csa12g012990.1 159 IADETLTEFISKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGIAARACGLVGLDPT-RVAEILKDKPCWSRDCRSLDIVNVLSTAngGTLELI 252 68899*****************************************************.9999****99*****************999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+p Rdf+++Ry+ +++g++vi+++S++++q+ p+ s+++vRae lpSg+li+p+++g+s +++v+h+dl+ ++++++lrsl+ Csa12g012990.1 253 YMQLYAPTTLAPaRDFWMLRYTSVMEDGSLVICERSLNNTQNGPSmppSPHFVRAEILPSGYLIRPCEGGGSILHIVDHFDLEPWSVPEVLRSLY 347 *******************************************99999*********************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s++ +++t++a+l+++++ Csa12g012990.1 348 ESSTLLAQRTTMAALRYLRQ 367 ***************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.499 | 10 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-15 | 12 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-16 | 15 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.19E-16 | 15 | 75 | No hit | No description |
Pfam | PF00046 | 2.7E-16 | 16 | 73 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-18 | 17 | 73 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.14E-6 | 67 | 106 | No hit | No description |
PROSITE profile | PS50848 | 27.25 | 149 | 377 | IPR002913 | START domain |
CDD | cd08875 | 2.44E-81 | 153 | 368 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.1E-24 | 157 | 363 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.37E-36 | 158 | 369 | No hit | No description |
SMART | SM00234 | 3.1E-42 | 158 | 368 | IPR002913 | START domain |
Pfam | PF01852 | 3.1E-58 | 159 | 367 | IPR002913 | START domain |
Pfam | PF08670 | 1.0E-47 | 690 | 832 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 834 aa Download sequence Send to blast |
MGGGSNNSHN IDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI 60 KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSHLVY ENSYFRQHPQ 120 NGNLATTDTS CESVVTSGQH HLTPQHQPRD ASPAGLLSIA DETLTEFISK ATGTAVEWVQ 180 MPGMKPGPDS IGIVAISHGC TGIAARACGL VGLDPTRVAE ILKDKPCWSR DCRSLDIVNV 240 LSTANGGTLE LIYMQLYAPT TLAPARDFWM LRYTSVMEDG SLVICERSLN NTQNGPSMPP 300 SPHFVRAEIL PSGYLIRPCE GGGSILHIVD HFDLEPWSVP EVLRSLYESS TLLAQRTTMA 360 ALRYLRQISQ EISQPNVTGW GRRPAALRAL SQRLSKGFNE AVNGFSDEGW SMLESDGIDD 420 VTLLVNSSPT KMMMTSSLPF SNGFTSMPSA VLCAKASMLL QNVPPSILLR FLREHRQEWA 480 DNSIDAYSAA AIKAGPCSLP IPRPGSFGGQ VILPLAHTIE NEEFMEVIKL ESLGHYQEDM 540 MMPADIFLLQ MCSGVDENAV ESCAELIFAP IDASFSDDAP IIPSGFRIIP LDSKSEGLSP 600 NRTLDLASAL DVGSRTAGDS CGSRGNTKSV MTIAFQLAFE MHMQENVASM ARQYVRSVIA 660 SVQRVALALS PSSHQLSGLR PPPASPEAHT LARWISHSYR CYLGVDLLKP HGTDILKSLW 720 HHPDAVMCCS LKALPPVFTF ANQAGLDMLE TTLVALQDIT LEKIFDNNNN GKKTMCSDFP 780 QIMQQGFMCM DGGVCMSSMG RAVTYEKAVA WKVLNDDEEP HCICFMFLNW SFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g012990.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441292 | 0.0 | AJ441292.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 8 (hb-8 gene). | |||
GenBank | AY099631 | 0.0 | AY099631.1 Arabidopsis thaliana HD-zip transcription factor (athb-8) (At4g32880) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447326.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8-like isoform X2 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | V4P388 | 0.0 | V4P388_EUTSA; Uncharacterized protein | ||||
STRING | XP_010447325.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |