PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g004910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9388.16 Da PI: 7.7684 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.1e-09 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT E +l+ +a +++ + +W+ +ar +g +++++++ ++ Csa12g004910.1 11 TWTRKENKLFERALAKYDQDtpdRWHNVARAVG-SKSAEEVRRHYE 55 6******************9*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.652 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 1.6E-9 | 8 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-7 | 11 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.68E-8 | 11 | 58 | No hit | No description |
Pfam | PF00249 | 6.2E-8 | 11 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.21E-14 | 12 | 64 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MASSSTSSNA TWTRKENKLF ERALAKYDQD TPDRWHNVAR AVGSKSAEEV RRHYELLIRD 60 VNDIDSGRYP DPNYQSNGYN H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-28 | 3 | 80 | 2 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g004910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT010770 | 4e-73 | BT010770.1 Arabidopsis thaliana At4g36570 mRNA, complete cds. | |||
GenBank | BT011255 | 4e-73 | BT011255.1 Arabidopsis thaliana At4g36570 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010446777.1 | 7e-55 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_010446778.1 | 7e-55 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-42 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | R0GTL0 | 1e-46 | R0GTL0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010446777.1 | 3e-54 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-31 | RAD-like 1 |