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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa11g102870.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
bHLH |
| Protein Properties |
Length: 399aa MW: 45508.9 Da PI: 5.1664 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g102870.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 38.2 | 2.6e-12 | 234 | 277 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L
Csa11g102870.1 234 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 277
589*********************66......****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 399 aa
Download sequence Send
to blast |
HTHISGLDCI YKYTYNFIFF DTLCFLFFLF VLIITRNQSF HHKGENKQKM ELSTQMNVYE 60
ELLVPTKQET TDNNINSLSF NGEFDHHHHH HQFFPNGYSI DYLCFNNEEE DENTLLYPSS 120
FMDLISQPPP LLLHQPPPLQ PPSPPLSSSA AVATFDYPFL EALQEIIDSS SSSPPLILQN 180
GQEDNNNNFH NPTSSYPSPL MESDQSKSFS VGYCGGETNK KKSKKLEGQP SKNLMAERRR 240
RKRLNDRLSM LRSIVPKISK MDRTSILGDA IDYMKELLDK INKLQDEEQE LGNSNNSHHS 300
KLFGDLKDLN TNEPMVRNSP KFEIDRRDDD TRVDICCSPK PGLLLXCLQD CLIIVFLLLW 360
ESTEPASCSE GAEQRDFITS EDIKQALFRN AGYGGSCL*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 2e-13 | 229 | 307 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_B | 2e-13 | 229 | 307 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_E | 2e-13 | 229 | 307 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_F | 2e-13 | 229 | 307 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_G | 2e-13 | 229 | 307 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_I | 2e-13 | 229 | 307 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_M | 2e-13 | 229 | 307 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_N | 2e-13 | 229 | 307 | 5 | 83 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 219 | 241 | KKKSKKLEGQPSKNLMAERRRRK |
| 2 | 236 | 243 | ERRRRKRL |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY085134 | 0.0 | AY085134.1 Arabidopsis thaliana clone 13267 mRNA, complete sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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