PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g102430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 370aa    MW: 41937.5 Da    PI: 7.7001
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g102430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64.1e-1183119339
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                     ++k +rr+++NReAAr+sR+RKka++++Le+   +L 
  Csa11g102430.1  83 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 119
                     6899**************************8655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-581144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.77283125IPR004827Basic-leucine zipper domain
PfamPF001703.7E-883114IPR004827Basic-leucine zipper domain
CDDcd147081.61E-2285136No hitNo description
SuperFamilySSF579592.63E-785120No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-787113No hitNo description
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
PfamPF141444.3E-28171246IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNIGNGNMN TPSHIIIPAN NQKLDNNLSE  60
ETSHGTAGTP HMFDQEASTS RNPDKIQRRL AQNREAARKS RLRKKAYVQQ LETSRLKLIQ  120
LEQELDRARQ QGFYVGNGIE TNSLGFSETM NPGIAAFEME YGHWVEEQNR QICELRTVLH  180
GHINDVELCL LVETAMKHYF ELFKMKSTAA KADVFFVMSG MWKTSAERFF LWIGGFRPSD  240
LLKVLLPHFD ILTDQQILDV CNLRQSCQQA EDALSQGMEK LQHTLADCVA GGQLGGGSYI  300
PQVNSAIDRL EALVSFVNQA DHLRHETLQQ MYRILTTRQA ARGLLALGEY FQRLRALSSS  360
WATRHREPT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g102430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171420.0AK317142.1 Arabidopsis thaliana AT5G65210 mRNA, complete cds, clone: RAFL21-72-M22.
GenBankAK3174880.0AK317488.1 Arabidopsis thaliana AT5G65210 mRNA, complete cds, clone: RAFL23-11-L19.
GenBankAY0870490.0AY087049.1 Arabidopsis thaliana clone 31032 mRNA, complete sequence.
GenBankAY0995930.0AY099593.1 Arabidopsis thaliana DNA binding protein TGA1a-like protein (At5g65210) mRNA, complete cds.
GenBankAY1288380.0AY128838.1 Arabidopsis thaliana DNA binding protein TGA1a-like protein (At5g65210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462108.10.0PREDICTED: transcription factor TGA1 isoform X1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLR0EWJ40.0R0EWJ4_9BRAS; Uncharacterized protein
STRINGXP_010462108.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]