PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g100300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 447aa MW: 46561.8 Da PI: 6.7638 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.8 | 9.8e-38 | 240 | 299 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+st+tkfCyynnyslsqPryfCk+CrryW kGG+lrn+PvGgg+rknkk s Csa11g100300.1 240 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWPKGGTLRNIPVGGGCRKNKKPS 299 6789*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 0.004 | 89 | 108 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-34 | 228 | 293 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.8E-31 | 241 | 297 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.202 | 243 | 297 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
SSKGNYNNGC EAKSEVVLSL DWQQDQCYSN GGNGGVGKSD GGGYINGLAE SSGGSMLDSS 60 TTSPSAADIL AACSTRPQAS AVAVAAAALM DGGRRLRPPH DHPQKSSKGN YNNGCEAKSE 120 VVLSLDWQQD QCYSNGGNGG VGKSDGGGYI NGLAESSGGS MLDSSTTSPS AADILAACST 180 RPQASAEAES SGGSMLDSST TSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD 240 HPQKCPRCES THTKFCYYNN YSLSQPRYFC KTCRRYWPKG GTLRNIPVGG GCRKNKKPSS 300 SNSSSSTSSG KKPSNIVTNN TTDLMALAHS HQNYQNSPLG FLILSSRPTD FLDSKYDLMG 360 VNNDNDLVMA DHGSNGDHHH HITWGNYNNG CEAKSEVVLS LDWQQDQCYS NGGGNGGVGK 420 SDGGGYINGL GSSWNGLMNG YIWILD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g100300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB009053 | 0.0 | AB009053.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2. | |||
GenBank | AK228992 | 0.0 | AK228992.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL16-29-O12. | |||
GenBank | BT020467 | 0.0 | BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds. | |||
GenBank | BT020576 | 0.0 | BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866523.1 | 2e-99 | dof zinc finger protein DOF5.6 | ||||
Swissprot | Q9FM03 | 3e-88 | DOF56_ARATH; Dof zinc finger protein DOF5.6 | ||||
TrEMBL | D7MNC9 | 4e-98 | D7MNC9_ARALL; Uncharacterized protein | ||||
STRING | scaffold_802976.1 | 6e-99 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6374 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 4e-81 | Dof family protein |
Publications ? help Back to Top | |||
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