PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g090450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 449aa MW: 51025.9 Da PI: 10.1199 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.5 | 4.4e-12 | 276 | 321 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L+ A e ++sLq Csa11g090450.1 276 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTIAREQLSSLQ 321 8899********************97.....8***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.27E-15 | 263 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.691 | 271 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.26E-10 | 273 | 325 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-13 | 275 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 276 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-13 | 277 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MDAFYNEASQ EPPSSSSRSL ARSLLLEYRQ SLIPLHNGHV PSMAFMNNLP YVEIRQQEIQ 60 RLAYNDAQRL FYQMKIEESL REWFPEDFNR NSSPVNSDYL RPPRHLSTSS SSLSPNHVSE 120 YSSLLFPLIP KPSTTTDAVN APGHPLLAPI NMIHHQQQQQ EPLFRNRELE EEAMTQAILA 180 VLRGSSSPPS TSSSPLRKGR ATAFKRYYCM ISGGDRARPQ PSVRKQSMMK RAITFYNRLN 240 IQRRERFVRE NATMAGDGSG GSGGGGRSPS TTQLHHMISE RKRREKLNES FQALRSLLPP 300 GTKKDKASVL TIAREQLSSL QGEISKLLKR NRELEAKLAG EREIGNDLQP DERFNVCIRH 360 IPESTSRERM LDLRVVLRED IIRVDDLMIR LLEFLKQINN VSLVSIEARS RARDSSVVLV 420 SLRLKIEGEW DESAFQEAVR RVVADLAH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 284 | ERKRRE |
2 | 280 | 285 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g090450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB024035 | 0.0 | AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019088479.1 | 0.0 | PREDICTED: putative transcription factor bHLH041 isoform X2 | ||||
Swissprot | Q9LTS4 | 0.0 | BH041_ARATH; Putative transcription factor bHLH041 | ||||
TrEMBL | R0GQ20 | 0.0 | R0GQ20_9BRAS; Uncharacterized protein | ||||
STRING | XP_010443354.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7060 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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