PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 225aa MW: 25987.7 Da PI: 7.4361

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g084870.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.3	2.2e-26	120	170	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++++++++F+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl Csa11g084870.1 120 QDKLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 170 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.985	106	191	IPR003035	RWP-RK domain
Pfam	PF02042	9.9E-22	123	170	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDPNSISLLN SQKIENDYDP DSLYDMLDKL PPLESLLDIE DLKPTRSLHF QFQYESFEDL 60 VESIDVTNII PSDDIDMLAQ EPYISSGSSS PLAVENDCPS SNVRSEKRTV KKRNAKKKRQ 120 DKLEMSEIKQ FFDRPIMKAA KELNVGLTVL KKRCRELGIY RWPHRKLKSL NSLIKNLKSV 180 GMEEEVKNLE EHRVLIEQEP DAELSDGTKK LRQACFKANY KRRK*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g084870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB018116	2e-62	AB018116.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNB8.
GenBank	CP002688	2e-62	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010445487.1	1e-154	PREDICTED: protein RKD4-like
Swissprot	Q9LVU8	1e-113	RKD4_ARATH; Protein RKD4
TrEMBL	R0GE40	1e-126	R0GE40_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010442858.1	1e-163	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-100	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]