PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g038720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 31918.5 Da PI: 4.5138 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7.1e-09 | 134 | 181 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f L ++l + + +K +K +i A++ +++L Csa11g038720.1 134 TKACRERLRREKLNERFMDLSSVLEPG---RTPKTDKPAIIDDAIRILNQL 181 5678**********************8...8****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.814 | 130 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-6 | 134 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.14E-7 | 134 | 184 | No hit | No description |
SuperFamily | SSF47459 | 5.5E-12 | 136 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-8 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-10 | 138 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MYPSLDDDFV SDLFCFDQSN GAELDNYTQF GVNLQPNQED TFPDFVSYGV NLQQDSGQVF 60 SIGPQLDLSS FDGVLPQEPE QVAGKDCGTV QEEEVEIDSA SSGGAVKQEQ EHLDDDYSRK 120 RARTGSCSRG GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI IDDAIRILNQ 180 LRDEAHKLEE TNQKLLEEIK SLKAEKNELR EEKLVLKADK EKTEQQLKSM VVPSSGFMPQ 240 IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g038720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088053 | 0.0 | AY088053.1 Arabidopsis thaliana clone 40736 mRNA, complete sequence. | |||
GenBank | AY102106 | 0.0 | AY102106.1 Arabidopsis thaliana AT4g14410/dl3245w mRNA, complete cds. | |||
GenBank | AY133565 | 0.0 | AY133565.1 Arabidopsis thaliana At4g14410/dl3245w mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010440465.1 | 0.0 | PREDICTED: transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 0.0 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | R0F5N0 | 0.0 | R0F5N0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010440465.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.1 | 1e-161 | bHLH family protein |