PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g035280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 332aa    MW: 36872.5 Da    PI: 6.0498
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g035280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.26.7e-08345440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++ +++ ++C++++  +C +C ++ H+       Ht++
  Csa11g035280.1  3 AQCDYCGTEKALIYCKSDSAKICLNCDVNVHSAnplsqrHTRS 45
                    68******99*********************667888888875 PP
2CCT59.71e-20277320144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYk+K+++R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Csa11g035280.1 277 RDEAKKRYKQKKSRRMFGKQIRYASRKARADTRKRVKGRFVKAG 320
                     99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.8E-12147IPR000315B-box-type zinc finger
PROSITE profilePS501199.613147IPR000315B-box-type zinc finger
PfamPF006431.2E-6345IPR000315B-box-type zinc finger
CDDcd000211.10E-7547No hitNo description
PROSITE profilePS5101714.366277319IPR010402CCT domain
PfamPF062034.1E-16277319IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEAQCDYCGT EKALIYCKSD SAKICLNCDV NVHSANPLSQ RHTRSLLCEK CFLQPTVIHC  60
LNEKVSLCQG CHWTASNCNG LGNRLQNLNP YSGCPSQSDF TKIWSSVIEP TASNWVSPFD  120
DSIKINELVD WDGLSTPTQT QNLKDHSSIF FMESSLPKVI EEEECSGLDL CEGINLDDAP  180
LNFNASNDII GCSSPDQTKC YKYEGSYKED NKTGLSPLFL PALSGGNVVP SMSLSMTNIT  240
GESSPTDYQD CGISPGFLIG DSPWESNVEV TYNPKSRDEA KKRYKQKKSR RMFGKQIRYA  300
SRKARADTRK RVKGRFVKAG ENFEYDASMV M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g035280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019088020.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233790.0COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLR0GLP70.0R0GLP7_9BRAS; Uncharacterized protein
STRINGXP_010440319.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.10.0B-box type zinc finger protein with CCT domain