 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Csa11g028690.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
Family |
MYB |
Protein Properties |
Length: 338aa MW: 39389.7 Da PI: 8.2328 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa11g028690.1 | genome | CSGP | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 59.9 | 5.5e-19 | 127 | 173 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd +l+++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
Csa11g028690.1 127 KGQWTAEEDRILIQLVEKHGLRKWSHIAQVLP-GRIGKQCRERWHNHL 173
799*****************************.*************97 PP
|
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 179 | 221 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+
Csa11g028690.1 179 KETWSEEEDIVLIEFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 221
578*******************.*********.***********8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MVEFYESKPQ LMNHHFQAAE NPTYFTRNHR PHHHQEINLV DENDHMDLEQ NNMMMMRMIP 60 LDYPPTETMK PAMNFVMPDE ISCVSADNDY YRSSSSFNKT KPYLTRKLSS SSSSSSWKEK 120 KPSTLVKGQW TAEEDRILIQ LVEKHGLRKW SHIAQVLPGR IGKQCRERWH NHLRPDIKKE 180 TWSEEEDIVL IEFHKEIGNK WAEIAKRLPG RTENSIKNHW NATKRRQFSK RKCRSKYPRP 240 SLLQDYIKSL NLGVLSATSV PARGRRRESS KKKDVVAAVE EKKKDQEEIY GQDRVVPECV 300 FTDDFGFNEK LLEEGCSIDS LLDDIPQPEI DAVVHGI*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | DQ198082 | 0.0 | DQ198082.1 Arabidopsis thaliana myb family transcription factor (MYB98) mRNA, complete cds. |