PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 343aa MW: 39363.1 Da PI: 9.2149

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g006200.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.7	7.5e-26	212	260	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sl+dlskyF l+i +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Csa11g006200.1 212 GLSLKDLSKYFGLTIVEASRSLNVGLTVLKKKCREFGIPRWPHRKIKSL 260 589********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	195	280	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-21	213	260	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAHSLTSLAI FQSLIRKEAV RSLHVYGSVE IEREFLFESE SPYVEKEAKP LFLLEGSRRP 60 EISEGSVYGT WRCIFLFRFN HPLPRFPTLL CPSRNPKLED IPKLANELKF ISESKPKTPS 120 KVSDQEQCSS VGYCKSDQPK PLKIESEEDS VRDCEVDQPK PRRIVLKQDL NCLPDSETES 180 EESENEKTEH SESDENVKML MGKRAPAKIV AGLSLKDLSK YFGLTIVEAS RSLNVGLTVL 240 KKKCREFGIP RWPHRKIKSL DCLIHDLQRE AEREQENSEA AAMAVAKKQK KLETEKRNIV 300 ERPFMEIQKE TKRFRQINFK KRHRASRAKK NQESLLSNSS ST*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAHSLTSLAI FQSLIRKEAV RSLHVYGSVE IEREFLFESE SPYVEKEAKP LFLLEGSRRP  60
EISEGSVYGT WRCIFLFRFN HPLPRFPTLL CPSRNPKLED IPKLANELKF ISESKPKTPS  120
KVSDQEQCSS VGYCKSDQPK PLKIESEEDS VRDCEVDQPK PRRIVLKQDL NCLPDSETES  180
EESENEKTEH SESDENVKML MGKRAPAKIV AGLSLKDLSK YFGLTIVEAS RSLNVGLTVL  240
KKKCREFGIP RWPHRKIKSL DCLIHDLQRE AEREQENSEA AAMAVAKKQK KLETEKRNIV  300
ERPFMEIQKE TKRFRQINFK KRHRASRAKK NQESLLSNSS ST*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g006200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	7e-69	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	7e-69	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	7e-69	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010437453.1	0.0	PREDICTED: protein RKD5-like
Swissprot	O81791	1e-172	RKD5_ARATH; Protein RKD5
TrEMBL	R0GJ89	0.0	R0GJ89_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010437453.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-150	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]