PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g005740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 323aa MW: 35817 Da PI: 10.3808 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.7 | 1.1e-07 | 216 | 237 | 5 | 26 |
CHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka 26 +r +r++kNRe+A rsR+RK++ Csa11g005740.1 216 RRHKRMIKNRESAARSRARKQE 237 699******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.3E-7 | 216 | 240 | No hit | No description |
CDD | cd14707 | 2.83E-20 | 216 | 307 | No hit | No description |
SuperFamily | SSF57959 | 4.92E-6 | 216 | 261 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 219 | 234 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.6E-4 | 273 | 303 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MLSSAKHQRN LRVSATNKNK TLNKVSSISP SSPSSSSSSS TSSSSPLPSQ DSQTQKRSLI 60 TMEEVWKDIN LASIHHINHH SQHPQHNHEP RFRSHNHQNQ NPNSIFQDFL NGPLNEEPAP 120 TSLAMGSASN GDSTTVTALC SSPFPPPATV LSLNSGAGFE FLDNQDPLVV TPNSNLQSHH 180 NLSNIPSFNT PFEALVTSTC FGKKRGQESN EGTGNRRHKR MIKNRESAAR SRARKQECVS 240 LFLLSTQGYQ REEKKCTYAI KMLLMKPFVS HLQAYTNELE LEVAHLQAEN ARLKRQQDQL 300 RMAAANPQPK KNTLQRSFTA PF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g005740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB105826 | 0.0 | AB105826.1 Arabidopsis thaliana FD gene for bZIP transcription factor, exon 1-3, complete cds, cultiva:Nossen. | |||
GenBank | GQ177111 | 0.0 | GQ177111.1 Arabidopsis thaliana ecotype C24 FD gene, complete sequence. | |||
GenBank | GQ177127 | 0.0 | GQ177127.1 Arabidopsis thaliana ecotype Mt-0 FD gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437402.1 | 0.0 | PREDICTED: protein FD-like isoform X1 | ||||
Swissprot | Q84JK2 | 1e-146 | FD_ARATH; Protein FD | ||||
TrEMBL | D7MBR6 | 1e-156 | D7MBR6_ARALL; Predicted protein | ||||
STRING | XP_010437402.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-125 | bZIP family protein |