PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g006150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 293aa MW: 32124.5 Da PI: 10.7821 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.7 | 1.1e-12 | 221 | 275 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r +r++kNRe+A rsR+RK++ ++ eLe +v+ L+aeN +Lk + ++l+ +a Csa10g006150.1 221 RRHKRMIKNRESAARSRARKQEcaYTNELELEVAHLQAENASLKRQQDQLRMAAA 275 699******************5559**********************99987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-7 | 213 | 283 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.4E-12 | 221 | 274 | No hit | No description |
Pfam | PF00170 | 6.8E-11 | 221 | 272 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.42E-9 | 221 | 271 | No hit | No description |
CDD | cd14707 | 5.44E-24 | 221 | 277 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 224 | 239 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MLSSAKHQRN LRVSATNKNK TLNKASSISP SSSSSSSSSS SSSSSTLSSS PLPAQDSQTQ 60 KRSLITMEEV WKDINLASIH HINRHSQHPQ HNHEPRFRSH NPQNQNPNSI FQDFLNGPLN 120 QEPAPTSLAM GSASNGNSTT VTALCSSPFP PLATVLSLNS GAGFEFLDNQ DPLVVTPNSN 180 LQSHHNLSNI PSFNTRFEAL VTSTCFGKKR GQESNEGTGN RRHKRMIKNR ESAARSRARK 240 QECAYTNELE LEVAHLQAEN ASLKRQQDQL RMAAANQQPK KNTLQRSFTA PF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g006150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432214.1 | 0.0 | PREDICTED: protein FD-like isoform X3 | ||||
Swissprot | Q84JK2 | 1e-149 | FD_ARATH; Protein FD | ||||
TrEMBL | D7MBR6 | 1e-158 | D7MBR6_ARALL; Predicted protein | ||||
STRING | XP_010437402.1 | 1e-175 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-140 | bZIP family protein |