PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g003930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 398aa MW: 44584.6 Da PI: 9.5883 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.2 | 2.3e-09 | 43 | 71 | 1 | 34 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslg 34 s+y+GV++++++grW+++I+d + k+++l Csa10g003930.1 43 SQYRGVTFYRRTGRWESHIWD------CgKQVYLA 71 78*******************......55999986 PP | |||||||
2 | AP2 | 43.4 | 8.7e-14 | 189 | 239 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Csa10g003930.1 189 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 239 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.8E-4 | 44 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-6 | 111 | 155 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.8E-12 | 112 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 113 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-17 | 189 | 249 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.60E-26 | 189 | 249 | No hit | No description |
Pfam | PF00847 | 2.3E-9 | 189 | 239 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-32 | 190 | 253 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-16 | 190 | 247 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.672 | 190 | 247 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 229 | 249 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
VKFCQSDLAT GSSTGKATTV TAAVVEPAQP LKKSRRGPRS RSSQYRGVTF YRRTGRWESH 60 IWDCGKQVYL ADINFNIEDY DDDLKQMTNL TKEEFVHVLR RQSTGFPRGS SKYRGVTLHK 120 CGRWEARMGQ FLGKKAYDRA AIKFRGVEAD INFNIEDYDD DLKQMTNLTK EEFVHVLRRQ 180 STGFPRGSSK YRGVTLHKCG RWEARMGQFL GKKYVYLGLF DTEVEAARAY DKAAIKCNGK 240 DAVTNFDPSI YDEELNAESS GNPTPQDHNL DLSLGNSANS KQKSQDMRLK MTQQQQDLHS 300 NEILGLGQTG MLNHIPNSNH QYPGSSNIGN GGGFSLFPGA ENHRFDGRAS TNQVLTNAAA 360 SSGFSPHHHN QIFNSSPTSH QNWLQTNGFQ PPLMRPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g003930.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU12546 | 0.0 | U12546.1 Arabidopsis thaliana Columbia homeotic APETALA2 protein (APETALA2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010436227.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2 | ||||
Swissprot | P47927 | 1e-172 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | R0GZQ1 | 1e-171 | R0GZQ1_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.7867s1579.1.p | 0.0 | (Boechera stricta) | ||||
STRING | XP_010436227.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-174 | AP2 family protein |