PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g090160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 270aa MW: 30223.2 Da PI: 9.0874 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.7 | 6.5e-30 | 143 | 202 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK ++++ pr+Y+rC+++ +C vkkkv+rsaedp++v+ tYeg+Hnh+ Csa09g090160.1 143 VKDGYQWRKYGQKITRDNPSPRAYFRCSFSpSCLVKKKVQRSAEDPSLVVATYEGTHNHP 202 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.5E-28 | 134 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-25 | 140 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.8E-34 | 143 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-24 | 144 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.867 | 145 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MDYDPNTNPF DLHFSGKLPK KEVSDSSSAD VKTKWLVKDD ETCMLQEELN RVNSENKKLT 60 ETLARVCEKY YALQNLLKEL QSPENVKFQN QKLTKKRKQD LDEFVSSPVG LSCGPTIEKI 120 TSDKATVSTA YFHTEKSDTS LTVKDGYQWR KYGQKITRDN PSPRAYFRCS FSPSCLVKKK 180 VQRSAEDPSL VVATYEGTHN HPGSNASGSR TVKLDLVQGV LEPVEEKKER GTIQDVLVQK 240 MASSLTKDPK FTAALAAAIS GRFIEQSRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 145 | 201 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 145 | 201 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00068 | PBM | Transfer from AT2G25000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g090160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227987 | 0.0 | AK227987.1 Arabidopsis thaliana mRNA for putative WRKY-type DNA binding protein, complete cds, clone: RAFL14-52-F05. | |||
GenBank | BT004611 | 0.0 | BT004611.1 Arabidopsis thaliana At2g25000 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010429489.1 | 0.0 | PREDICTED: probable WRKY transcription factor 60 | ||||
Swissprot | Q9SK33 | 1e-166 | WRK60_ARATH; Probable WRKY transcription factor 60 | ||||
TrEMBL | Q0WSE5 | 1e-164 | Q0WSE5_ARATH; Putative WRKY-type DNA binding protein | ||||
STRING | XP_010429489.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6584 | 19 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25000.1 | 1e-168 | WRKY DNA-binding protein 60 |