PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g079840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 101aa MW: 11606.2 Da PI: 10.0098 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.2e-07 | 12 | 55 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT + + + +a + + ++ +W+ +a+ + g++ +++k ++ Csa09g079840.1 12 SWTFDQNKMFERALAIYDKDtpdRWHNVAKAVE-GKSVEEVKRHY 55 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.3E-6 | 9 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-13 | 11 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-5 | 13 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MASNSKSSIS SSWTFDQNKM FERALAIYDK DTPDRWHNVA KAVEGKSVEE VKRHYDILVE 60 DLINIETGRV PLPKYKNKTF DSKSRVVNDL NSRMMKNLKI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-30 | 1 | 100 | 1 | 92 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g079840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC025814 | 1e-73 | AC025814.7 Arabidopsis thaliana chromosome 1 BAC F22H5 genomic sequence, complete sequence. | |||
GenBank | AY519525 | 1e-73 | AY519525.1 Arabidopsis thaliana MYB transcription factor (At1g75250) mRNA, complete cds. | |||
GenBank | BT026091 | 1e-73 | BT026091.1 Arabidopsis thaliana At1g75250 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-73 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ395346 | 1e-73 | DQ395346.1 Arabidopsis thaliana RAD-like protein 6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428536.1 | 2e-68 | PREDICTED: protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 6e-54 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A397YRT9 | 9e-52 | A0A397YRT9_BRACM; Uncharacterized protein | ||||
STRING | XP_010428536.1 | 6e-68 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-51 | RAD-like 6 |