PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g005270.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 374aa MW: 42222.5 Da PI: 6.8484

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g005270.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64	1.6e-20	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en rq tf+kR+ngilKKA+ELS+LCd+++ +++fs+tgk Csa09g005270.1 10 KLENPNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGK 53 5689999***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.3E-31	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.207	1	53	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.15E-24	2	82	No hit	No description
SuperFamily	SSF55455	1.57E-25	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.9E-19	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MGRVKLKIKK LENPNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAALCCGT 60 RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD VNIREFIASS NSTIEDLSAQ 120 ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS IDQLRAHKEH FGQQQQAMQI 180 DNANFVKDWS TCSMQDGIQI PLEQQLQSMS WILNSNTTNI VTEEHNPIPQ REVECSASSS 240 FGSYPGYFGT GKSPEITISG QETSFLDELN TGQLKPQLSS HQQFTNTNIT PYNPNMHNDM 300 NHQPTLPPPS PPQVYIPMNQ REYHMNGFFE APPPGSSVYN NTNQTRFGSS SSSLPCSLSM 360 FDEYLFSQMQ QPN*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MGRVKLKIKK LENPNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAALCCGT  60
RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD VNIREFIASS NSTIEDLSAQ  120
ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS IDQLRAHKEH FGQQQQAMQI  180
DNANFVKDWS TCSMQDGIQI PLEQQLQSMS WILNSNTTNI VTEEHNPIPQ REVECSASSS  240
FGSYPGYFGT GKSPEITISG QETSFLDELN TGQLKPQLSS HQQFTNTNIT PYNPNMHNDM  300
NHQPTLPPPS PPQVYIPMNQ REYHMNGFFE APPPGSSVYN NTNQTRFGSS SSSLPCSLSM  360
FDEYLFSQMQ QPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-12	1	92	1	90	MEF2 CHIMERA
6byy_B	1e-12	1	92	1	90	MEF2 CHIMERA
6byy_C	1e-12	1	92	1	90	MEF2 CHIMERA
6byy_D	1e-12	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g005270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446459	0.0	DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBank	DQ652954	0.0	DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010425079.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
Refseq	XP_010425080.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
Swissprot	Q1PFA4	0.0	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	D7LQC8	0.0	D7LQC8_ARALL; Predicted protein
STRING	XP_010425076.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8754	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	0.0	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]