PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g060820.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 752aa MW: 84895.8 Da PI: 8.1273

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g060820.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94	1.5e-29	124	209	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+y+k+keg+ +r ++ +++++f+qlea Csa08g060820.1 124 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYRKTKEGKAGR--QDGKHYRFFRQLEA 209 8***********************************999*************************98..55667*****85 PP
2	trihelix	45.3	2.3e-14	306	368	37	87
trihelix 37 km..............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +m +e+g++rs k+C+ek+enl k+y+k+keg+ +r ++ +++++f+qlea Csa08g060820.1 306 NMkrlxlgvvlfwimsEEHGYQRSGKKCREKFENLYKYYRKTKEGKAGR--QDGKHYRFFRQLEA 368 44666666666777779****************************98..55667*****85 PP
3	trihelix	63.8	3.7e-20	585	670	1	82
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +W +qe+ +L+e+r++m++++++ g++++ lWee+++k+ + gf +rs+ Ckekwe++++ ++k+k++ +k+++++sstc + Csa08g060820.1 585 CWDEQEIIKLMEIRTSMDSAFQEilgGCSDEFLWEEIAAKLVQLGFdQRSALLCKEKWEWISNGMRKEKKQINKKRKDNSSTCGVY 670 7*******************98889***************999******************99999999999999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.98	123	182	IPR017877	Myb-like domain
Pfam	PF13837	3.7E-20	124	210	No hit	No description
CDD	cd12203	7.05E-19	124	189	No hit	No description
PROSITE profile	PS50090	4.507	287	341	IPR017877	Myb-like domain
Pfam	PF13837	4.3E-9	320	369	No hit	No description
Pfam	PF13837	9.7E-12	584	670	No hit	No description
CDD	cd12203	9.90E-19	584	653	No hit	No description
PROSITE profile	PS50090	6.051	586	643	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MDQDQHPQYG IPELRQLMKG GGRTTTTSPS TSSHFPSDFF GFNLAPALPQ QPHRLHQFTT 60 DQEMGFLPRG IHGLGGGGSS TAGNNSNLNA STSGGGGGGV GFSGFLDGGG FGGGVGGDGG 120 GTGRWPRQET LTLLEIRSRL DHKFKEANQK GPLWDEVSRI MSEEHGYQRS GKKCREKFEN 180 LYKYYRKTKE GKAGRQDGKH YRFFRQLEAL YGDSNNLVSC PNHNTQFMSS AIHGFHTQNP 240 MNVTTTTSNI HNVDSVHGFH QSLSLSNNYN SSELELMTSS SEGNDSSSRR KTRSWKGKIK 300 EFIDANMKRL XLGVVLFWIM SEEHGYQRSG KKCREKFENL YKYYRKTKEG KAGRQDGKHY 360 RFFRQLEALY GDSNNLVSCP NHNTQFMSSA IHGFHTQNPL NVTTTTSNIH NVDSVHGFHQ 420 SLSLSNNYNS SELELMTSSS EGNDSSSRRK TRNWKGKIKE FIDANMKRLI ERQDVWLEKL 480 TKVIEDKEEQ RMMKEEEWRK TEAARIDKEH LFWAKERARM EARDVAVIEA LQYLTGKPLI 540 KPLCSSPEER INGNNEIRNN SENQNENGSD QTMTNNVTVK GSGSCWDEQE IIKLMEIRTS 600 MDSAFQEILG GCSDEFLWEE IAAKLVQLGF DQRSALLCKE KWEWISNGMR KEKKQINKKR 660 KDNSSTCGVY YPRTEENPMY NNQESGYNDN DQHQMNEQGN VGSSTSNANV TTGNPSGAMA 720 ASTNCFPFFM GDGDQNLWES YGMRLSKGEN Q*

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MDQDQHPQYG IPELRQLMKG GGRTTTTSPS TSSHFPSDFF GFNLAPALPQ QPHRLHQFTT  60
DQEMGFLPRG IHGLGGGGSS TAGNNSNLNA STSGGGGGGV GFSGFLDGGG FGGGVGGDGG  120
GTGRWPRQET LTLLEIRSRL DHKFKEANQK GPLWDEVSRI MSEEHGYQRS GKKCREKFEN  180
LYKYYRKTKE GKAGRQDGKH YRFFRQLEAL YGDSNNLVSC PNHNTQFMSS AIHGFHTQNP  240
MNVTTTTSNI HNVDSVHGFH QSLSLSNNYN SSELELMTSS SEGNDSSSRR KTRSWKGKIK  300
EFIDANMKRL XLGVVLFWIM SEEHGYQRSG KKCREKFENL YKYYRKTKEG KAGRQDGKHY  360
RFFRQLEALY GDSNNLVSCP NHNTQFMSSA IHGFHTQNPL NVTTTTSNIH NVDSVHGFHQ  420
SLSLSNNYNS SELELMTSSS EGNDSSSRRK TRNWKGKIKE FIDANMKRLI ERQDVWLEKL  480
TKVIEDKEEQ RMMKEEEWRK TEAARIDKEH LFWAKERARM EARDVAVIEA LQYLTGKPLI  540
KPLCSSPEER INGNNEIRNN SENQNENGSD QTMTNNVTVK GSGSCWDEQE IIKLMEIRTS  600
MDSAFQEILG GCSDEFLWEE IAAKLVQLGF DQRSALLCKE KWEWISNGMR KEKKQINKKR  660
KDNSSTCGVY YPRTEENPMY NNQESGYNDN DQHQMNEQGN VGSSTSNANV TTGNPSGAMA  720
ASTNCFPFFM GDGDQNLWES YGMRLSKGEN Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g060820.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL162506	0.0	AL162506.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F17C15 (ESSA project).
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010423678.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	0.0	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	R0FDJ3	0.0	R0FDJ3_9BRAS; Uncharacterized protein
STRING	XP_010423678.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	0.0	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]