PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa08g058470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 230aa MW: 25589 Da PI: 9.0666 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9e-05 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Csa08g058470.1 54 YSCSFCRREFKSAQALGGHMNVH 76 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.72E-6 | 51 | 80 | No hit | No description |
PROSITE profile | PS50157 | 11.157 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0084 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MERGKCLMSM KLRPVVTKPC SDASFFWPFG EERAFSAVEE YGGGGGCMWP PRSYSCSFCR 60 REFKSAQALG GHMNVHRRDR ARLKQQSLSP SSTDQATPPG YDRHQQQPQQ VLDVGSKVLV 120 QEESRKPTGT KREISDVCNN NVLENPTKRV EHDNDGVKTD LSVGLLSSEF DPRKKQLING 180 SSSSWKRAKT DISRFPMMLG LVIGVSKING HHDELDLELR LGADPPKVN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 49 | 76 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 49 | 76 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa08g058470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB107371 | 0.0 | AB107371.1 Arabidopsis thaliana RBE mRNA for one finger-type zinc finger protein for RABBIT EARS, complete cds. | |||
GenBank | AP002030 | 0.0 | AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4. | |||
GenBank | AY088861 | 0.0 | AY088861.1 Arabidopsis thaliana clone 97505 mRNA, complete sequence. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423391.1 | 1e-172 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
Swissprot | Q9LHS9 | 1e-145 | RBE_ARATH; Probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | R0HEW6 | 1e-150 | R0HEW6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010423391.1 | 1e-171 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5128 | 25 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06070.1 | 1e-148 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|