PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g057670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 377aa    MW: 42466.6 Da    PI: 7.214
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g057670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32192246155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Csa08g057670.1 192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRI 246
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.085189249IPR017930Myb domain
SuperFamilySSF466891.45E-17189246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28191247IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23192247IPR006447Myb domain, plants
PfamPF002491.3E-8196245IPR001005SANT/Myb domain
PfamPF143794.4E-20276323IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDNINFEFSN ASQGSQLQSQ PQPPQPFNLQ NLNNMIQYNQ PSSPWTTETF SGFPPFDCSA  60
NQSFPLQCSS SKPYPSCFHP YHHQSSDHTS SLDQTVSMVP MLPLPDQYMK PLYQRSCAKD  120
FAAANASSAS YSLSFEASQD PQELCRRTYS NSNVTHLNFS SSHQPKQTHP KFPSHTSFSS  180
HGGSVSPNCV NKTRIRWTQD LHEKFVECVN RLGGADKATP KAILKLMDSD GLTIFHVKSH  240
LQKYRIAKYM PESLEGKFEK RACGKELSQL DTKTGVQIKE ALQLQLDVQR HLHEQLEIQR  300
NLQLRIEEQG KQLKIMMEQQ QKTKESLMKT PEAEASLSLP ASDHTPDPPP PFLVQDNTES  360
LMLTSYGDNQ LQSKIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-23192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-23192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-23192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-23192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-23192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-23192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-23192249259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-23192249259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g057670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266440.0AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBankBT0126580.0BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423296.10.0PREDICTED: myb family transcription factor PHL5-like isoform X1
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLD7LZU10.0D7LZU1_ARALL; Uncharacterized protein
STRINGXP_010423296.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.10.0G2-like family protein