PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g053490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 362aa    MW: 38856.9 Da    PI: 8.4118
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g053490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.37e-23248311164
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                     eke+kre+rkq+NRe+ArrsR+RK+ae+e+L+ kv++L aeN++L++++++l++e++kl+ e+e
  Csa08g053490.1 248 EKEVKREKRKQSNRESARRSRLRKQAETEQLAVKVDALVAENMTLRSKVSQLNDESEKLRLENE 311
                     89*********************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.7E-30196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-14130229No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-16246307No hitNo description
SMARTSM003389.5E-20248312IPR004827Basic-leucine zipper domain
PfamPF001709.4E-22248310IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.771250313IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11251307No hitNo description
CDDcd147027.31E-20253302No hitNo description
PROSITE patternPS000360255270IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGSNEEGNLT NSADKPTQAA PVTEQSNVHV YHHDWAAMQA YYGSRVAIPQ YYNSNVATGH  60
APPPYMWASP SPMMAPYGAP YPPFCPPGGV YAHPGVQMGS QPQGPVSQAT PGVTTPLAMD  120
APSNSPGNTD HGFMKKLKEF DGLAMSISNN KVGSTGHSSS EHRSSQSSEN DGSSNGSDGN  180
TTGGEQSKRK RRREISPSTG EKPSSQTSPP LRGENEKADV TMGTPVMPTA MDFQNSGGMN  240
GIPQQWNEKE VKREKRKQSN RESARRSRLR KQAETEQLAV KVDALVAENM TLRSKVSQLN  300
DESEKLRLEN EALLDQLKAQ ATGKTENLIS RVDKNNSVSG GKNVQHQLLN ASPITDPVAA  360
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192KRKRRR
2188192RKRRR
3264270RRSRLRK
4264271RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g053490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0626670.0AY062667.1 Arabidopsis thaliana Unknown protein (GBF2) mRNA, complete cds.
GenBankAY0933160.0AY093316.1 Arabidopsis thaliana unknown protein (GBF2) mRNA, complete cds.
GenBankX638950.0X63895.1 A.thaliana mRNA GBF2 for G-box binding factor 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422772.10.0PREDICTED: G-box-binding factor 2-like isoform X4
SwissprotP427750.0GBF2_ARATH; G-box-binding factor 2
TrEMBLR0FFA00.0R0FFA0_9BRAS; Uncharacterized protein
STRINGXP_010422771.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.10.0G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]