PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g002100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 234aa    MW: 25908.1 Da    PI: 8.7061
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g002100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-056587123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C ++F ++  L  H++ H
  Csa08g002100.1 65 FSCNYCQRTFYSSQALGGHQNAH 87
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-76092No hitNo description
Gene3DG3DSA:3.30.160.606.8E-46391IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6356592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDSSSGKPRP SDSSCIKGIR LDLKLAGYDS SQPELNQELN LLNCLEASVV TPSFNGSSST  60
EQKLFSCNYC QRTFYSSQAL GGHQNAHKRE RTLAKRGQRM ASAAAFGHPY GFSPFPFHGQ  120
YSNRSLAIQA HSMSPKPSSY NVFGGEYGQI NWSRIPLVQQ PAIGKLPSTE NQYTHHQMMI  180
APPLTSTCEN ISRFDVGRIP VEFPTPELWR RGGELLKPAE EEQQKNLDLS LKL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g002100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937450.0AB493745.1 Arabidopsis thaliana At5g10970 mRNA for hypothetical protein, partial cds, clone: RAAt5g10970.
GenBankAL3652340.0AL365234.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project).
GenBankAL3912220.0AL391222.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453131.11e-159PREDICTED: zinc finger protein 3-like
SwissprotQ392626e-78ZFP3_ARATH; Zinc finger protein 3
TrEMBLR0HFT81e-151R0HFT8_9BRAS; Uncharacterized protein
STRINGXP_010453131.11e-159(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-139C2H2 family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Zhang A, et al.
    The Arabidopsis Gene zinc finger protein 3(ZFP3) Is Involved in Salt Stress and Osmotic Stress Response.
    PLoS ONE, 2016. 11(12): p. e0168367
    [PMID:27977750]