PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g055020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 237aa MW: 26495.9 Da PI: 9.0472 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.5 | 7.3e-30 | 110 | 169 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK ++++ pr+Y+rC+++ +C vkkkv+rsaedp++v+ tYeg+Hnh+ Csa07g055020.1 110 VKDGYQWRKYGQKITRDNPSPRAYFRCSFSpSCLVKKKVQRSAEDPSFVVATYEGTHNHP 169 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.5E-28 | 101 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-25 | 107 | 169 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-33 | 110 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-24 | 111 | 169 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.775 | 112 | 171 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDYDPNTNPF DLHFSGKLPK KEVSDSSSAD VKPKWLVKDD EDLLKELQSP EHVKFQNQKL 60 TKKRKQDLDD FVSSPVGLSC GPTIEKITSE KATVSTAYFH TEKSDTSLTV KDGYQWRKYG 120 QKITRDNPSP RAYFRCSFSP SCLVKKKVQR SAEDPSFVVA TYEGTHNHPG QHASVSRTVK 180 LDLVQGVLEP VEEKKERGTI QEVLVQQMAS SLTKDPKFTA ALAAAISGRF IEQSRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 112 | 168 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 112 | 168 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g055020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227987 | 0.0 | AK227987.1 Arabidopsis thaliana mRNA for putative WRKY-type DNA binding protein, complete cds, clone: RAFL14-52-F05. | |||
GenBank | BT004611 | 0.0 | BT004611.1 Arabidopsis thaliana At2g25000 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417256.1 | 1e-169 | PREDICTED: probable WRKY transcription factor 60 | ||||
Swissprot | Q9SK33 | 1e-140 | WRK60_ARATH; Probable WRKY transcription factor 60 | ||||
TrEMBL | Q0WSE5 | 1e-137 | Q0WSE5_ARATH; Putative WRKY-type DNA binding protein | ||||
STRING | XP_010417256.1 | 1e-169 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6584 | 19 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25000.1 | 1e-137 | WRKY DNA-binding protein 60 |