PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g036580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 385aa    MW: 42680.2 Da    PI: 6.9161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g036580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.23e-27204263259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ +ed++ + +tYeg+H+h+
  Csa07g036580.1 204 NDGCQWRKYGQKTAKTNPLPRAYYRCSMSsNCPVRKQVQRCgEEDTSSFMTTYEGNHDHP 263
                     8***************************99**********845799*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-28188265IPR003657WRKY domain
PROSITE profilePS5081124.707198265IPR003657WRKY domain
SuperFamilySSF1182904.45E-24198265IPR003657WRKY domain
SMARTSM007748.9E-33203264IPR003657WRKY domain
PfamPF031063.6E-25204263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MTKEETVSCS QPSDGVMGES DKEEELDATK AKVEKVREEN EKLKLLLSTI LNNYNSLQMH  60
VSEVLRKQQG ASIELEVDRD QDKDNDFGVD ISLRLGRSSE QTISKKEEKV DKASGEKEEG  120
SKKKRSSLGL GFQIQNCEDS TSKLDYLCRQ VKNVNAENKC VSSRKDVKTA RNENQQDVLE  180
EHEQTSLKKT RVCVKATCED PSINDGCQWR KYGQKTAKTN PLPRAYYRCS MSSNCPVRKQ  240
VQRCGEEDTS SFMTTYEGNH DHPLPMEATH MAAGTSAAAS LLRSGSSSSS SSTSASLSYY  300
FPYHHFSIST TNAHPTVTLD LTRPNYTNQS PISSSSFSLN FSSPDPPPPS SQDQTLNFGG  360
LRTQASLSTD SLMARYRTRL SGQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-192032651474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g036580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415644.10.0PREDICTED: probable WRKY transcription factor 36
SwissprotQ9CAR40.0WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLR0HY670.0R0HY67_9BRAS; Uncharacterized protein
STRINGXP_010415644.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.10.0WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]