PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g016030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 349aa    MW: 39376.8 Da    PI: 4.6967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g016030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.5e-15431171797
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +p ++ e+     + +kt +l+ + g+ W+v +  + +++++++++GW +Fv +n++k+g+f++F +dg   +++ v++f
  Csa07g016030.1  43 LIPVSYYEHLP--RPLPKTGILMGTGGKIWKVAM--KSRQEQVYFERGWANFVADNDIKDGEFLIFVFDG--YRRYEVSIF 117
                     68888885444..4588999**************..999999*************************876..444577776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.9E-927120IPR003340B3 DNA binding domain
PROSITE profilePS5086312.54827120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-1732121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-1742122IPR015300DNA-binding pseudobarrel domain
PfamPF023629.7E-1243117IPR003340B3 DNA binding domain
CDDcd100174.03E-1544117No hitNo description
PROSITE profilePS5001117.828111348IPR000719Protein kinase domain
SMARTSM002200.003174344IPR000719Protein kinase domain
SuperFamilySSF561121.75E-35202333IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.202.5E-7205242No hitNo description
Gene3DG3DSA:1.10.510.105.1E-26243333No hitNo description
PfamPF000695.9E-17253333IPR000719Protein kinase domain
PROSITE patternPS001080274286IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRLFPRHFLR PPWLPVMFFL VSSVSIFPST ALTPCQFLCV EKLIPVSYYE HLPRPLPKTG  60
ILMGTGGKIW KVAMKSRQEQ VYFERGWANF VADNDIKDGE FLIFVFDGYR RYEVSIFAHG  120
GCKEIRAAVE VEEISDGTES ENNESSLESV IQDEEEEAID ADAKSDTLTI LLIVQTQTTI  180
SVESAEVRLY SCQLIQTWTE LYNGAVKKLD ESSTQGLSEF KNEVSVIARL QHVNLVCLRG  240
RTQSSRLNWQ TRFEIIDGIA RGLEYMQEES RVKIVHRDLK PGNILLDIDM VPKISDFGLA  300
RICRKNENEA FTTAAAGSYG YMSPEYAGEG IYSDEIGCLQ LRSYCAGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cth_A7e-2020533544197Concanavalin A-like lectin protein kinase family protein
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g016030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.16e-48B3 family protein