PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g044480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 617aa    MW: 67957.6 Da    PI: 7.2464
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g044480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.2e-08267287526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd+C +aHg
  Csa06g044480.1 267 PCPEFRK-GSCPKGDSCEYAHG 287
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.3E-1464181IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.75E-1378161IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.76180161IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001780110IPR002110Ankyrin repeat
PfamPF136377.9E-981133No hitNo description
CDDcd002047.40E-1282178No hitNo description
SMARTSM002484115147IPR002110Ankyrin repeat
SMARTSM003566.3E-5262288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976262289IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5267287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5267288IPR000571Zinc finger, CCCH-type
SMARTSM0035637297320IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465297321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MCGAKSNLCS SKTLTEVEFM RQKSEEAATT AATAMSLLEF AACDDLSSFK REIEEKPSME  60
IDEAGLWYCR RVGSKKMGFE ERTPLMVAAM YGSMEVLSYI IATGRSDVNR VCSDEKVTAL  120
HCAVSGCSVS IVEIIKILLD ASASPNCVDA NGNKPVDLLV KASRFVPNQS RKAVEVLLTG  180
NHDGSVGLMG DDEEEEVKSV VTKYPADASL PDINEGVYGT DEFRMFSFKV KPCSRAYSHD  240
WTECPFVHPG ENARRRDPRK YPYTCVPCPE FRKGSCPKGD SCEYAHGVFE SWLHPAQYRT  300
RLCKDETGCA RRVCFFAHRR DELRPVNAST GSAMVSPRSS NQSPEMPVMS PLALGSSPMN  360
SPMASGGVPL SPRNGGLWQN RVNSLTPPPL QLNGSRLKST LSARDMDIEM ELRFRGLDNR  420
RLGDLKPSNL EETFGSYDSS AVMQLQSPSR HSQMNHYHPS SPVRQQPPPH GFESSAAMAA  480
AVMNARTSAF AKRSLSFKPA LVAASNVSDW GSPKGKLEWG MQREELNKLR RSASFGIHGN  540
NNNNNNCVSR PARDYSDEPD VSWVNSLVKE NAPERTFGLN ERVGNTVNGA AGRDTFKLPS  600
WAEQMYIDHE QQQIVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g044480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517427.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
RefseqXP_010517428.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLR0HRW60.0R0HRW6_9BRAS; Uncharacterized protein
STRINGXP_010517427.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein