 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa06g041010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
Trihelix |
| Protein Properties |
Length: 292aa MW: 34665 Da PI: 7.0774 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa06g041010.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 83.6 | 2.5e-26 | 44 | 126 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+Wt +e+++Li +r e+++++ ++k++k lWe +s+kmr++ f rsp+qCk+kw+nl +r+k ++++e + +++++p++d+++
Csa06g041010.1 44 QWTVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVTRFKGCETMEAEI---ARQQFPFYDDMQ 126
7********************************************************************97...45679*****96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MDGHHHLQQL QYLNKHHHLH HPHPQSSQTP EIASPVAGGD RFPQWTVEET KELIGIRGEL 60
DQTFMETKRN KLLWEVISNK MRDKSFPRSP EQCKCKWKNL VTRFKGCETM EAEIARQQFP 120
FYDDMQIIFT TRMQRMLWVE SEGGVGGTSG TVARKREYSS DEEEENVNEE LVDVSNDPKI 180
LTNPKKNIAK KRKGGSNSNN GVREVLEEFM RHQIRMESEW REGWEAREKE RAEKEEEWRR 240
KMEELEKERV TMERMWRDRE EQRRSREEMR AEKRDSQINA LLAKLTRDGS L*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 183 | 192 | PKKNIAKKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF453582 | 0.0 | AF453582.1 Arabidopsis thaliana GT-1 like transcription factor (GT1L) mRNA, complete cds. |
