PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g030660.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 582aa MW: 64440.7 Da PI: 8.0079

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g030660.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.9e-08	256	276	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg Csa06g030660.1 256 PCPEFRK-GSCPKGDSCEYAHG 276 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	1.03E-12	27	154	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0059	72	102	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	14.053	72	181	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.5E-13	73	173	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.52E-12	74	170	No hit	No description
SMART	SM00248	4.1	107	139	IPR002110	Ankyrin repeat
SMART	SM00356	6.3E-5	251	277	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.976	251	278	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.7E-6	256	277	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	256	276	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-4	283	315	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.653	286	310	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	45	286	309	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MCSGPKSNLC SSRTLTEIES RQKKEDTMVL LEFAASDDLD SFKRDVEEKG LDLDESGLWY 60 CRQVGSKKMG FEERTPLMVA AMYGSVKVLS FIVSTGKSDV NRACGEERVT ALHCAVSGCC 120 VNLIEVINVL VDASALVNSV DANGNQPLDV FVRVSRFLAS PRRKAVELLL RGGRVSGLID 180 ETVEEEIKVV SKYPADVSLP DINEGVYGSD EFRMYSFKVK PCSRAYSHDW TECAFVHPGE 240 NARRRDPRKY PYTCVPCPEF RKGSCPKGDS CEYAHGVFES WLHPAQYKTR LCKDETGCAR 300 RVCFFAHKRE EMRPVNASTG SAVAQSPFSS VEMMMPGLSP LAYTSGVSTP PVSPMANGVP 360 SSPRNSWQNR VNTLTPPALQ LNGGSRLKST LSARDIDMEM EMELRLRGFG NNAEESFGSY 420 VSSPNRNSQM SQNMNQHYPS SPVRQQPSHH GFDSSAAAAV AVMKARSSAF AKRSLSFKPA 480 TTQASQQSNL SDWGSPNGKL EWGMKGEELN KMRRSVSFGI QGNNNSYNNV AREYRDEPDV 540 SWVNSLVKDS VVSERSFGMN ERVRTMSWAE QMYREKVQAV A*

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MCSGPKSNLC SSRTLTEIES RQKKEDTMVL LEFAASDDLD SFKRDVEEKG LDLDESGLWY  60
CRQVGSKKMG FEERTPLMVA AMYGSVKVLS FIVSTGKSDV NRACGEERVT ALHCAVSGCC  120
VNLIEVINVL VDASALVNSV DANGNQPLDV FVRVSRFLAS PRRKAVELLL RGGRVSGLID  180
ETVEEEIKVV SKYPADVSLP DINEGVYGSD EFRMYSFKVK PCSRAYSHDW TECAFVHPGE  240
NARRRDPRKY PYTCVPCPEF RKGSCPKGDS CEYAHGVFES WLHPAQYKTR LCKDETGCAR  300
RVCFFAHKRE EMRPVNASTG SAVAQSPFSS VEMMMPGLSP LAYTSGVSTP PVSPMANGVP  360
SSPRNSWQNR VNTLTPPALQ LNGGSRLKST LSARDIDMEM EMELRLRGFG NNAEESFGSY  420
VSSPNRNSQM SQNMNQHYPS SPVRQQPSHH GFDSSAAAAV AVMKARSSAF AKRSLSFKPA  480
TTQASQQSNL SDWGSPNGKL EWGMKGEELN KMRRSVSFGI QGNNNSYNNV AREYRDEPDV  540
SWVNSLVKDS VVSERSFGMN ERVRTMSWAE QMYREKVQAV A*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269\|PubMed:17609218}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g030660.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress. {ECO:0000269\|PubMed:17609218}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226861	0.0	AK226861.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL08-18-O11.
GenBank	AL163832	0.0	AL163832.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19.
GenBank	AY056282	0.0	AY056282.1 Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds.
GenBank	BT008625	0.0	BT008625.1 Arabidopsis thaliana clone RAFL09-89-N11 (R19914) unknown protein (At3g55980) mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516193.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 47-like
Swissprot	Q93ZS9	0.0	C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBL	A0A1I9LNJ4	0.0	A0A1I9LNJ4_ARATH; Salt-inducible zinc finger 1
STRING	XP_010516193.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM877	26	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55980.1	0.0	salt-inducible zinc finger 1

Publications ? help Back to Top
LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona. New Phytol., 2013. 200(4): p. 1225-33 [PMID:23914903] Liang Y,Gao Y,Jones AM Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization. Front Plant Sci, 2017. 8: p. 1015 [PMID:28659958]