PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g088940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 330aa    MW: 35797.3 Da    PI: 11.0688
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g088940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.5e-14161205347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   Csa05g088940.1 161 PWTEDEHRLFLTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKY 205
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.107.2E-46178IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.1256377IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.687154210IPR017930Myb domain
SuperFamilySSF466893.07E-16156210IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-16157208IPR006447Myb domain, plants
SMARTSM007179.8E-11158208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10160205IPR009057Homeodomain-like
PfamPF002493.4E-11161205IPR001005SANT/Myb domain
CDDcd001671.73E-9161206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
FVVKGSSTQH KSGIIPIYTK PKPPFSSLLF IFFPHPQNIS LSLYLRSSSV LLSSRAASMS  60
RSCSQCGNNG HNSRTCPTEI TTTGDDNRNA GAGEKGIMLF GVRVTEASSR SVRKTVSMNN  120
LVQLDQTLDS NGPVEDGGGY ASDDVVHASG SRNRERKRGT PWTEDEHRLF LTGLHKVGKG  180
DWRGISRNFV KTRTPTQVAS HAQKYFLRRT NQNRRRRRSS LFDIAPDSFI ESIQEESQMQ  240
TPLEGIPLGS KLNRPVPVPI PIPPSRRMAG LNLSKKAPAT TTEKMFPLSL NLSSASSSSS  300
SNEQKARGGS RASGFVAMSS NGDSIMGVA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g088940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512072.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ9LVS06e-58KUA1_ARATH; Transcription factor KUA1
TrEMBLR0IBR71e-135R0IBR7_9BRAS; Uncharacterized protein
STRINGXP_010512072.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97912636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.21e-114MYB_related family protein
Publications ? help Back to Top
  1. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]