PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g020400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 292aa    MW: 33431.7 Da    PI: 4.8695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g020400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07169213655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  Csa05g020400.1 169 SIAARERRRRIADKTHELGKLIPGG-----QKLNTAEMFQSAAKYVKFLQ 213
                     567899*****************86.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-10161221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.633163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-9166220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-9169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5169213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.24E-4185216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSMDCLSYFF NYDPPVQLQD CFLPDMDMII PESDSFFLES QPQLQFHQPL FQEEAPSQTY  60
FDPFCDQFLS PQEISLPDPK TEIFNETHDL DSLLPTPKRQ KLVTSSYHCN THNHFQSHNP  120
SFFDPFGDLD FVPEASSFPE FRVPDFSLEF KVGRRAEDDT KKPTLSSQSI AARERRRRIA  180
DKTHELGKLI PGGQKLNTAE MFQSAAKYVK FLQSQVGILQ LMQTTKKGSS NVQLETHVLL  240
ESQAIQEKLS TEEVCLVPCE MVQDLTTQET IRRNPKISRE INKLLSKDPA N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g020400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2344120.0AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509701.10.0PREDICTED: transcription factor bHLH53
SwissprotQ84RD01e-176BH053_ARATH; Transcription factor bHLH53
TrEMBLD7LH481e-180D7LH48_ARALL; Predicted protein
STRINGXP_010509701.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-165bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]