 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa05g015280.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
Trihelix |
| Protein Properties |
Length: 295aa MW: 35026.3 Da PI: 7.1651 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa05g015280.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 82.5 | 5.8e-26 | 47 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+ +e+++Li +r e+++++ ++k++k lWe +s+kmr++ f rsp+qCk+kw+nl +r+k ++++e + +++++p++d+++
Csa05g015280.1 47 QWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVTRFKGCETMEAEI---ARQQFPFYDDMQ 129
7********************************************************************97...45679*****96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MDGHHQHHHL QQLQYLNKHH HLHHPHPQSS QTPEIASPVA GGDRFPQWSV EETKELIGIR 60
GELDQTFMET KRNKLLWEVI SNKMRDKSFP RSPEQCKCKW KNLVTRFKGC ETMEAEIARQ 120
QFPFYDDMQI IFTTRMQRML WVESEGGVGG TSGTAARKRE YSSDEEEENV NEELVDVSND 180
PKILTNPKKN IAKKRKGSSN SNNGVREVLE EFMRHQIRME SEWREGWEAR EKERAEKEEE 240
WRRKMEDLEK ERVTMERMWR DREEQRRSRE EMRAEKRDSL INALLAKLTR DGSL*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 186 | 195 | PKKNIAKKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF453582 | 0.0 | AF453582.1 Arabidopsis thaliana GT-1 like transcription factor (GT1L) mRNA, complete cds. |
