PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g012690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 839aa    MW: 92840.6 Da    PI: 7.5188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g012690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.9e-08240260526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd+C +aHg
  Csa05g012690.1 240 PCPEFRK-GSCPKGDSCEYAHG 260
                     8******.*************9 PP
2zf-CCCH24.25.9e-08490510526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd+C +aHg
  Csa05g012690.1 490 PCPEFRK-GSCPKGDSCEYAHG 510
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.2E-1415160IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.0E-1355137IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.07957166IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00165787IPR002110Ankyrin repeat
PfamPF136378.4E-958110No hitNo description
CDDcd002041.19E-1159155No hitNo description
SMARTSM00248492124IPR002110Ankyrin repeat
PROSITE profilePS5010313.976235262IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5235261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5240261IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5240260IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465270294IPR000571Zinc finger, CCCH-type
SMARTSM0035637270293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976485512IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5485511IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5490511IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5490510IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465520544IPR000571Zinc finger, CCCH-type
SMARTSM0035637520543IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MRQKSEEGAT TMSLLEFAAC DDLSSFKREI EEKPSVEIDE AGLWYCRRVG SKKMGFEERT  60
PLMVAAMYGS MEVLSYIIAT GKSDVNRVCS DEKVTALHCA VSGCSVSIVE IIKILLDASA  120
SPNCVDANGN KPVDLLVKAS RFVPNQSRKA VEVLLTGSFD GLMGDEEEEV KSVVTKYPAD  180
ASLPDINEGV YGTDEFRMFS FKVKPCSRAY SHDWTECPFV HPGENARRRD PRKYPYTCVP  240
CPEFRKGSCP KGDSCEYAHG VFESWLHPAQ YRTRLCKDET GCARRVCFFA HRRDELRPVN  300
ASTGSAMVSP RSSNQSPEMP VMSPLALGSS PMNSPMASGG VPLSPRNGGL WQNRVNSLTP  360
PPLQLNGSRL KSTLSARDMD IEMELRFRGL DNRRLGDLKP SLLTGSYDGL MGDEEEEGEV  420
KSVVTKYPAD ASLPDINEGV YGTDEFRMFS FKVKPCSRAY SHDWTECPFV HPGENARRRD  480
PRKYPYTCVP CPEFRKGSCP KGDSCEYAHG VFESWLHPAQ YRTRLCKDET GCARRVCFFA  540
HRRDELRPVN ASTGSAMVSP RSSNQSPEMP VMSPLALGSS PMNSPMASGG VPLSPRNGGL  600
WQNRVNSLTP PPLQLNGSRL KSTLSARDMD IEMELRFRGL DNRRLGDLKP SNLEETFGSY  660
DSSAVMQLQS PSRHSQMNHY HPSSPVRQQP PPHGFESSAA MAAAVMNART SAFAKRSLSF  720
KPAPVAASNV SDWGSPNGKL EWGMQREELN KLRRSASFGI HGNNNNNNNC VSRPARDYSD  780
EPDVSWVNSL VKENAPERAF GLNERVGNTV NGAAGRDTFK LPSWAEQMYI DHEQQIVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g012690.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101233.10.0PREDICTED: zinc finger CCCH domain-containing protein 29 isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLR0HRW60.0R0HRW6_9BRAS; Uncharacterized protein
STRINGXP_010508901.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein