PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g009210.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 324aa MW: 36049.8 Da PI: 6.5913

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g009210.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	191	234	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L + Csa05g009210.1 191 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 234 8999********************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-13	187	251	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.622	189	241	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.0E-9	191	235	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.66E-11	191	245	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.8E-13	191	242	No hit	No description
CDD	cd14703	6.61E-24	192	242	No hit	No description
PROSITE pattern	PS00036	0	194	209	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAQLPPKIPN MTPHWPDFSS QKLSPISTPI ATATATTTAV QNPSWVDEFL DFSASRRGNH 60 RRSISDSITF LEAPTVSDHV SIENHHFDRF DDEQFMLMFT DDDNLHKKPS HINNNILGPT 120 GSSSNTSTPS NSINDDKKEP PSNHDMTNNN NNNNNINNDE VQSQCKTEPD DGTASTNNSG 180 DSSGNRILDP KRVKRILANR QSAQRSRVRK LQYISELERS VTSLQAEVSV LSPRVAFLDH 240 QRLLLNVDNS ALKQRIAALS QDKIFKDAHQ EALKREIERL RQVYNQQSLK TMDNANHSPA 300 TGAGATSAVD IMTSIEKEQL LNV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g009210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074657	0.0	AY074657.1 Arabidopsis thaliana At2g42380/MHK10.10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010508583.1	0.0	PREDICTED: basic leucine zipper 34-like
Swissprot	F4IN23	1e-172	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	R0FXS2	0.0	R0FXS2_9BRAS; Uncharacterized protein
STRING	XP_010508583.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	1e-166	bZIP family protein

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]