PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g002940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 361aa    MW: 38578.8 Da    PI: 9.8854
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g002940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.99.4e-23235296162
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++kl+  
  Csa05g002940.1 235 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVEALTAENMALRSELNQLNEKSDKLRGA 296
                     89*******************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.9E-29195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-17128236No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-19231295No hitNo description
SMARTSM003381.5E-21235299IPR004827Basic-leucine zipper domain
PfamPF001704.5E-21235297IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.38237300IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-11238294No hitNo description
CDDcd147021.20E-22240291No hitNo description
PROSITE patternPS000360242257IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGNNSEEPKP TKSDNKTSSP PDQTNVHVYP DWAAMQAYYG PRVAMPPYYN SAMAASGHPP  60
PPYMWNPQHM MSPYGSPYAA VYQHGGGVYP HPGIPMGALP QGQKAPPLTT PGTQLSIDTP  120
TKSTGNTDNG LMKKLKEFDG LAMSLGNGNP ETGADEHKRS RNSSETDGSS DGSDGNTTGA  180
DEPKLKRSRE GTPTKDGKQL VQSSSLHSAS LSSGDTGIKV IKGTGAGAVV SPGNERELKR  240
ERRKQSNRES ARRSRLRKQA ETEELAKKVE ALTAENMALR SELNQLNEKS DKLRGANATL  300
LDKLKCSEPE KRVSGNMLSR IKNSGAGDKN KNQGDNDSNS TSKLHQLLDT KPRANAVAAG  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251257RRSRLRK
2251258RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g002940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3703070.0AF370307.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBankAY0630930.0AY063093.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508046.10.0PREDICTED: G-box-binding factor 3 isoform X2
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLF4II620.0F4II62_ARATH; G-box binding factor 3
STRINGXP_010508044.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.20.0G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]