PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g065310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 360aa    MW: 38556.7 Da    PI: 9.9622
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g065310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.99.4e-23234295162
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++kl+  
  Csa04g065310.1 234 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVEALTAENMALRSELNQLNEKSDKLRGA 295
                     89*******************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.6E-26196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.5E-17129234No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-19230294No hitNo description
PfamPF001704.5E-21234296IPR004827Basic-leucine zipper domain
SMARTSM003381.5E-21234298IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.38236299IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.69E-11237293No hitNo description
CDDcd147024.39E-22239290No hitNo description
PROSITE patternPS000360241256IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGNNSEEPKP TKSDNKPSSP PDQTNVHVYP DWAAMQAYYG PRVAMPPYYN SAMAASGHPP  60
PPPYMWNPQH MMSPYESPYA AVYQHGGGVY PHPGIPMGSQ PQGQKAPPLT TPGTHLSIAT  120
PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PETGADEHKR SRNSSETDGS SDGSDGNTTG  180
ADEPKPKRSR EGTPTKDGKQ LAQSSSLRSA SLSSGDTGIK VIKGAGAVVS PGNERELKRE  240
RRKQSNRESA RRSRLRKQAE TEELAKKVEA LTAENMALRS ELNQLNEKSD KLRGANATLL  300
DKLKCSEPEK RVSGNMLSRI KNSGAGDKNK NQGDNDSNST SKLHQLLDTK PRANAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250256RRSRLRK
2250257RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g065310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3703070.0AF370307.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBankAY0630930.0AY063093.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506627.10.0PREDICTED: G-box-binding factor 3-like isoform X2
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLF4II620.0F4II62_ARATH; G-box binding factor 3
STRINGXP_010506626.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.20.0G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]