PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g063400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRF | ||||||||
Protein Properties | Length: 377aa MW: 43323.9 Da PI: 9.8052 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.9 | 3.7e-23 | 96 | 140 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkWRCs+rvl +k+CErH+hrgr+rsrk +e+ Csa04g063400.1 96 EPEPTRCRRTDGKKWRCSNRVLLYEKYCERHMHRGRKRSRKLVES 140 69***************************************9987 PP | |||||||
2 | WRC | 64.8 | 1.2e-20 | 333 | 374 | 1 | 42 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 d+epgrCrRtDGK+WRCsr+vl+++k+C+ H+hrg ++++k+ Csa04g063400.1 333 DKEPGRCRRTDGKRWRCSRDVLSDQKYCDEHMHRGVKKKKKH 374 689***********************************9997 PP | |||||||
3 | QLQ | 32.1 | 3.7e-12 | 29 | 64 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++ aaQ+ ++ +Q l+y+y+ a++ vP++L++ i++ Csa04g063400.1 29 WMKAAQFVEFQMQTLVYRYIEAGLRVPHHLVVSIWN 64 789*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 0.0034 | 28 | 64 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 12.532 | 29 | 64 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.4E-5 | 31 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.967 | 96 | 140 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-19 | 97 | 139 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 21.174 | 333 | 376 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.5E-17 | 335 | 374 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MLFSSWEMQS PKMEQDEELE ERRRKILPWM KAAQFVEFQM QTLVYRYIEA GLRVPHHLVV 60 SIWNSLALST SSSNYNSHSS SLLSSDKGLN HIHTVEPEPT RCRRTDGKKW RCSNRVLLYE 120 KYCERHMHRG RKRSRKLVES SYKVASSSAS LTKHDNTYGL DINNDSESVL HETMSGSSNA 180 QVVTIASLPS PRACDNVIRP SLVISESTEK SVSHGDRSRR NMEMSYDDLI SKKKSSMCVS 240 VVPLQGDESL PSVQKFFPEV SDSSLQAAQF SGNRKNEIIA RSREWKNMNV VNGGLFHSIH 300 FSQDTVLQDR GELRLQRVET DRGGFRLQRV ETDKEPGRCR RTDGKRWRCS RDVLSDQKYC 360 DEHMHRGVKK KKKHPC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 136 | GRKRSRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:21036927}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g063400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010518165.1 | 0.0 | PREDICTED: growth-regulating factor 9-like isoform X1 | ||||
Swissprot | Q8S9M3 | 1e-174 | GRF9_ARATH; Growth-regulating factor 9 | ||||
TrEMBL | D7LCJ7 | 0.0 | D7LCJ7_ARALL; At2g45480/F4L23.1 | ||||
STRING | XP_010506496.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13760 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 1e-164 | growth-regulating factor 9 |
Publications ? help Back to Top | |||
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