PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g057930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 351aa    MW: 39391.6 Da    PI: 7.8805
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g057930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.81.5e-10195238548
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                     kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  +
  Csa04g057930.1 195 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 238
                     8999********************************98777655 PP
2bZIP_120.97.7e-072723031748
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                     A+rsR RK+++i eLe+ v +L+ae + L  +
  Csa04g057930.1 272 AQRSRVRKLQYISELERSVTSLQAEVSVLSPR 303
                     89**********************98777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-13191255IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622193245IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.36E-11195249No hitNo description
PfamPF001704.8E-9195239IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-12195246No hitNo description
CDDcd147031.16E-23196246No hitNo description
PROSITE patternPS000360198213IPR004827Basic-leucine zipper domain
SMARTSM003380.0057261320IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-5272314No hitNo description
CDDcd147031.29E-14272311No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-7272311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAQLPPKIPN MTPHWPDFSS QKLSPFSTPI ATASATTTAV QNPSWVDEFL DFSASRRGNH  60
RRSISDSITF LEAPTVSDHA SIENHHFDRF DDEQFMLMFT DDDNLHKTPS HINNDNNNIL  120
GPTGSSSNTS TPSNSINDDK NEPPSNHDMT NNYKNNNNNI NNDEVQSQCK TEPDDGTAST  180
NNSGNSSGNR ILDPKRVKRI LANRQSAQRS RVRKLQYISE LERSVTSLQA EVSVLSPRVA  240
FLDHQRLLLN VDNSALKQRI AALSQDKIFK DAQRSRVRKL QYISELERSV TSLQAEVSVL  300
SPRVAFLDHQ RLLLNVDNSA LKQRIAALSQ DKIFKDGKFS FSLSYSLFTY *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g057930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746570.0AY074657.1 Arabidopsis thaliana At2g42380/MHK10.10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100580.11e-171PREDICTED: basic leucine zipper 34-like, partial
SwissprotF4IN231e-140BZP34_ARATH; Basic leucine zipper 34
TrEMBLR0FXS21e-154R0FXS2_9BRAS; Uncharacterized protein
TrEMBLR0HQG61e-154R0HQG6_9BRAS; Uncharacterized protein
STRINGXP_010506063.11e-170(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-128bZIP family protein
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]