PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g044160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 381aa    MW: 43007.7 Da    PI: 6.8511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g044160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05214233120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  Csa04g044160.1 214 FSCPVCFKTFNRYNNMQMHM 233
                     89*****************9 PP
2zf-C2H214.40.00011298320123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  Csa04g044160.1 298 FMCRKCGKAFAVRGDWRTHEKNC 320
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64214241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-6214233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.38214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-6280318No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5294318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808298318IPR007087Zinc finger, C2H2
SMARTSM0035549298318IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTDPYSNFFT DWFKSNPFHH YPSSSANPSP HPPPHLPPSS FFFFPQSGDL RRPPTPPPSP  60
PLREALPLLS LSPANKQQDH HHNHDHLIQE PPSTSMDVDY DHHHHQDDHN LDDDDHDVTV  120
ALHIGLPSPS AQEMASLLMM SSSSSSYSRT THPREDTNHK KDLDHDCSHG AAEGGEDDDE  180
DSVGGDGGCR ISRLNKGQYW IPTPSQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY  240
RKGPESLRGT QPTGMLRLPC YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC  300
RKCGKAFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKAFGNGHG AYGIDGFDEE  360
DEPASEVEQL DNDHESMQSK *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g044160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504701.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY10.0ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A178VLW50.0A0A178VLW5_ARATH; WIP2
STRINGXP_010504701.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-169C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]