PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g039830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 390aa MW: 43591.9 Da PI: 9.777 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.3e-09 | 304 | 353 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r ++T E e lv+av++lG+g+W+ I ++ ++Rt ++k++w ++ Csa04g039830.1 304 RRPFTVSEVEALVQAVERLGTGRWRDIKSHAFdhaNHRTYVDLKDKWKTL 353 679***************************999**9***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd01769 | 0.00462 | 173 | 233 | No hit | No description |
SuperFamily | SSF54236 | 4.34E-5 | 177 | 233 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 16.157 | 299 | 358 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-16 | 301 | 388 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-9 | 303 | 356 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-6 | 304 | 353 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-12 | 304 | 354 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.30E-18 | 305 | 355 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MMDCGVDAYQ LPVVPRAYRS PRGRRLKPLR KHRFEFEVLA QVAGELSGEC KNAIGSLAHE 60 TNETKDDVVV NNLLETMEVE VKPQPDLEKI SSKVLLSKDW LALGPSMSSS PITQEENFDS 120 SSKIDGKRKM CNMKERGSCS SQESQDMYPL KKRKLFYQNH RSDTHEAPFK FGIKSLKISE 180 LLVDVPESAT VGSLKLAVLE AVTRILKDGL NIGVLIRGKT IDDDSKTLRQ IGIPQDADDN 240 LSSLGFMLEP HKSETTSVTT LTTVSPATRR LRVLGSVDST EAVAAKPVRM KPASQPEMVQ 300 RRIRRPFTVS EVEALVQAVE RLGTGRWRDI KSHAFDHANH RTYVDLKDKW KTLVHTAKIS 360 ARQRRGEPVP QDLLDRVLAA HAFWSDRTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 6e-49 | 287 | 389 | 1 | 102 | Telomere binding protein TBP1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g039830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002686 | 1e-100 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019099949.1 | 0.0 | PREDICTED: telomere repeat-binding protein 6-like | ||||
Swissprot | Q9M347 | 0.0 | TRP6_ARATH; Telomere repeat-binding protein 6 | ||||
TrEMBL | A0A178VMQ2 | 0.0 | A0A178VMQ2_ARATH; TRFL4 | ||||
STRING | XP_010504150.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15921 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53790.1 | 0.0 | TRF-like 4 |