PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g025970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 145aa MW: 16315.5 Da PI: 10.6803 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 68 | 3.1e-21 | 21 | 79 | 15 | 66 |
TCP 15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 R RR+ l+++ a ++F+L++eLGf++d++t+ WLl++a+pai ++ g+ + Csa04g025970.1 21 SKDRNRRIPLPLSYASQVFQLTQELGFKSDGETVGWLLRNAEPAILAARGQgvnttsiG 79 345889*******************************************9955444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 13.901 | 12 | 68 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.3E-17 | 23 | 82 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MDSRNKQNNT ERKARSTPKS SKDRNRRIPL PLSYASQVFQ LTQELGFKSD GETVGWLLRN 60 AEPAILAARG QGVNTTSIGF IHSYLNIRNP SNIFYRNVRN ITVDNSVHCA DTSGVVCHRR 120 ITNHGQLKPA ETFEKTLFML LIEK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g025970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292943.2 | 8e-49 | transcription factor TCP16 | ||||
Swissprot | Q9M1U4 | 5e-24 | TCP16_ARATH; Transcription factor TCP16 | ||||
TrEMBL | D7LNL1 | 4e-47 | D7LNL1_ARALL; Uncharacterized protein | ||||
STRING | Cagra.24093s0001.1.p | 3e-48 | (Capsella grandiflora) | ||||
STRING | scaffold_501359.1 | 6e-48 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16163 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 2e-26 | TCP domain protein 16 |
Publications ? help Back to Top | |||
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