PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g029520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | G2-like | ||||||||
Protein Properties | Length: 358aa MW: 40135.7 Da PI: 9.0536 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.7 | 2.3e-32 | 220 | 275 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ Csa03g029520.1 220 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 275 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-29 | 217 | 278 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.163 | 217 | 277 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.58E-18 | 218 | 278 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-27 | 220 | 275 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-7 | 222 | 273 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MDVYAHKMKR CHEYVEALEE EHKKILVFQR ELPLCLELVT QAIESCRKEL SGSSSMSEHV 60 RSQSECSERT TSECGGGGAA VFEEFIPIKW SSPSSSDHEN DRDGADEKKI KMNNENNGDK 120 KKSDWLRSVQ LWNQSPDPQP KEDDHQVINK QKAAAVIEVK RNNAGAFQPF QKDKPKANER 180 SPQPLKTITP TPTTTSSSTA ETVGGKSEFE QLKQSQSSRK QRRCWSPELH RRFLHALQQL 240 GGSHVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRLHTRRPA TPSSTNGGEN QQQRQFMVVE 300 GIWVPSSHDR ATNTRVYAPI ATQPPPQSSP SGERSSHRCK SPATSSSTHT QHLLPLS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g029520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499096.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like | ||||
Swissprot | Q9FPE8 | 1e-166 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | R0GQJ3 | 1e-176 | R0GQJ3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010499096.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 1e-158 | G2-like family protein |
Publications ? help Back to Top | |||
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