PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa03g002200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 353aa MW: 39566.8 Da PI: 6.6365 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 98.1 | 5.7e-31 | 53 | 155 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 f+kv tpsdv+k++rlv+pk++ae++ ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + Csa03g002200.1 53 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGiGDesE 147 89***************************966677889*************************************************54344235 PP EE..EEEE CS B3 89 efelvvkv 96 + +l++ + Csa03g002200.1 148 RSKLYIDW 155 55555555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-42 | 46 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-30 | 49 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.93E-27 | 51 | 147 | No hit | No description |
SMART | SM01019 | 6.3E-22 | 53 | 159 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.748 | 53 | 159 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-28 | 53 | 156 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MDLSLAPTAT TSSDQEQDRD QELTSNIGAS SSSGTGNNLP MMMLPPPEKE HMFDKVVTPS 60 DVGKLNRLVI PKQHAERYFP LDSSNNQNGT LLNFQDRNGK MWRFRYSYWN SSQSYVMTKG 120 WSRFVKEKKL DAGDIVSFQR GIGDESERSK LYIDWRHRPD MSLVQAHQFG NFGFNFNFPT 180 TSQYSNRFLP LPEYNAVPIH RSLNIGNHQR SYYNNNNQRQ EFVGYGTYGN LAGRCYYTGS 240 PLDQRNIVGS EPLVIESVPV VPGRLTPVML PPPPSTAGKR LRLFGVNMEC GNDYSQQEES 300 WVVPRGEIGA SSSSSSALRL NLSTDHDDDG DGGDDDQFAK KGKSSFSLNF NP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-63 | 47 | 161 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-63 | 47 | 161 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa03g002200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC007323 | 0.0 | AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence. | |||
GenBank | AF196566 | 0.0 | AF196566.1 Arabidopsis thaliana chromosome I, partial sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | FJ873733 | 0.0 | FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010480723.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA3-like | ||||
Swissprot | Q9MAN1 | 0.0 | NGA3_ARATH; B3 domain-containing transcription factor NGA3 | ||||
TrEMBL | V4MWI9 | 0.0 | V4MWI9_EUTSA; Uncharacterized protein | ||||
STRING | XP_010480723.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13990 | 17 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01030.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|