PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g068420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 26067.3 Da    PI: 8.3652
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g068420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.9e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + +qvtfskR++g+lKKA ELSvLCda+va i+fs++gkly+++s
  Csa02g068420.1  9 KRIENITSKQVTFSKRKKGLLKKARELSVLCDAQVAAIVFSQKGKLYDFAS 59
                    79***********************************************86 PP
2K-box53.11.3e-1883157983
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                     + e+  + l++e++ + k+i+ Lq   R+l+G+dL+s+s+ eL+++  qLeksl+ +Rs+K ++  +++e+l++ 
  Csa02g068420.1  83 QREQYVQDLKNEITVMVKRIDLLQLHCRKLMGQDLDSCSVGELKEITIQLEKSLTVVRSRKAKINEDEVEKLKEE 157
                     678889******************999********************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.843161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-29388IPR002100Transcription factor, MADS-box
CDDcd002653.46E-36368No hitNo description
PRINTSPR004042.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003195.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014865.5E-1887168IPR002487Transcription factor, K-box
PROSITE profilePS5129711.88388183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVRKKIEIKR IENITSKQVT FSKRKKGLLK KARELSVLCD AQVAAIVFSQ KGKLYDFASS  60
NMQKMMERCE IYRREDFSAE RFQREQYVQD LKNEITVMVK RIDLLQLHCR KLMGQDLDSC  120
SVGELKEITI QLEKSLTVVR SRKAKINEDE VEKLKEEIEG ERELLDERPR MHLHEMFEEK  180
PLWMQSRSLV SENSAAASCV CVNMNTSDVE TDLFIGLPQS RML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-17166166MEF2 CHIMERA
6byy_B3e-17166166MEF2 CHIMERA
6byy_C3e-17166166MEF2 CHIMERA
6byy_D3e-17166166MEF2 CHIMERA
6bz1_A3e-17166166MEF2 CHIMERA
6bz1_B3e-17166166MEF2 CHIMERA
6bz1_C3e-17166166MEF2 CHIMERA
6bz1_D3e-17166166MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g068420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325428e-46AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281451.11e-125MADS-box protein AGL71
SwissprotQ9FLH54e-73AGL72_ARATH; MADS-box protein AGL72
SwissprotQ9LT933e-73AGL71_ARATH; MADS-box protein AGL71
TrEMBLR0GCF91e-124R0GCF9_9BRAS; Uncharacterized protein
STRINGXP_006281451.11e-125(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.14e-59AGAMOUS-like 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]