PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g061600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 304aa    MW: 34341.3 Da    PI: 4.6851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g061600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.5e-075779729
                    HHHHHHHHHHHHHHHHHHCTSCC CS
             HLH  7 erErrRRdriNsafeeLrellPk 29
                      Er+RR+++N++++ Lr+++P+
  Csa02g061600.1 57 VSERNRRQKLNQRLFALRSVVPN 79
                    57********************8 PP
2HLH42.61.1e-13136179755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  Csa02g061600.1 136 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 179
                     57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-74281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-45384No hitNo description
SMARTSM0035345693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-45779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-55781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.177129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17132194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-12132179No hitNo description
Gene3DG3DSA:4.10.280.107.9E-17135194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-14135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11136179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MENTIDQEFS NYWEPSSFLQ NEEFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER  60
NRRQKLNQRL FALRSVVPNI TKVTXQEFSN YWEPSSFLQN EEFEYDSWPL EEAISGSYDS  120
SSPDGAASSP ASKNIVSERN RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY  180
EEGKLEAEIR ELESTPKSSL SFSKDFDRDL LVPVTSKKLK QLDSSSSSSL IEVLELKVTF  240
MGERTMVVSI TCNKRTDTMV KLCEVFESLN LKILTSNLTS FSGMIFHTVF IEVSKHLSLF  300
LSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13134188963Transcription factor MYC2
5gnj_B1e-13134188963Transcription factor MYC2
5gnj_E1e-13134188963Transcription factor MYC2
5gnj_F1e-13134188963Transcription factor MYC2
5gnj_G1e-13134188963Transcription factor MYC2
5gnj_I1e-13134188963Transcription factor MYC2
5gnj_M1e-13134188963Transcription factor MYC2
5gnj_N1e-13134188963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g061600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1363800.0AY136380.1 Arabidopsis thaliana putative protein (At5g57140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443388.11e-147PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-142BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A087GBL81e-143A0A087GBL8_ARAAL; Uncharacterized protein
STRINGXP_010443388.11e-146(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-119bHLH family protein