PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g055270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 233aa MW: 26699.9 Da PI: 10.1628 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 41.2 | 4.7e-13 | 42 | 127 | 3 | 91 |
DUF573 3 fqrl.wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +qrl + ee ei +LqG++d++a tgk+p+ d+++ +ef+ + +++ s +++veK+ +LKk +++++ keps s +qk+ +l Csa02g055270.1 42 SQRLeYVEEEEIGVLQGILDCHALTGKNPFVDMKETFEFMTEYTNLE-SFDEYVEKMNSLKKLLMDQRRN---AKEPSTSDCYYQKVSKL 127 6888899**********************************999998.56789********988888877...88888888888888776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MTILNCTITQ LTGKKRKNEG TLLANKDVNA KRSKKVVKKV CSQRLEYVEE EEIGVLQGIL 60 DCHALTGKNP FVDMKETFEF MTEYTNLESF DEYVEKMNSL KKLLMDQRRN AKEPSTSDCY 120 YQKVSKLLGS AVEKPKRSKR VVKPKEEKQT VMSREGEKWF ENATLVGQVV SRGVDEDSLK 180 SKWDAVPTAK KNKMDQKWRI LRAKERESMP QKSKFFKDLV SVIVAASSSR LM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g055270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019086367.1 | 1e-139 | PREDICTED: probable transcription factor At4g00232 | ||||
TrEMBL | R0I4G6 | 2e-73 | R0I4G6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010490439.1 | 1e-107 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16691 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 7e-19 | DNA-binding storekeeper protein-related transcriptional regulator |