PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g048880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 454aa    MW: 49550.6 Da    PI: 8.0397
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g048880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-0778112137
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t 
   Csa02g048880.1  78 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTV 112
                      789*****************77.*********.8885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.76E-964114IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-976112IPR006447Myb domain, plants
PfamPF002492.1E-578112IPR001005SANT/Myb domain
CDDcd001672.52E-480114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MVSRNPNPSD GYFLDPTGMT APGLGPSFTA AVSSSSSSPT TSSSTAVAVA ADAAATVSSS  60
SEDLSKKIRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAFIGSK TVIQKCELAE  120
LCLLWLLIRI SLIPQIRSHA QKYFLKVQKS GTGEHLPPPR PKRKAAHPYP QKAHKSVQPQ  180
LPGSFKSTSE PNDPSFMFRP ESSSMLMTSP TTAAAAPWTN NAQTISFTPL TKAGAGANNN  240
CSSSSENTPR PRSNRDTSDQ GNVGHSLRVL PDFAQVYSFI GSVFDPYASN HLQKLKKMDP  300
IDVETVLLLM RNLSINLSSP DFEDHVTGAG ANNNCSSSSE NTPRPRSNRD TSDQGNVGHS  360
LRVLPDFAQV YSFIGSVFDP YASNHLQKLK KMDPIDVETV LLLMRNLSIN LSSPDFEDHR  420
RLLSSYDISS ETATDHHGGV NKTLIKDPPE IST*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g048880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5503030.0AY550303.1 Arabidopsis thaliana MYB transcription factor (At5g52660) mRNA, complete cds.
GenBankBT0020020.0BT002002.1 Arabidopsis thaliana putative protein (At5g52660) mRNA, complete cds.
GenBankBT0258820.0BT025882.1 Arabidopsis thaliana At5g52660 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445151.10.0PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W31e-178RVE6_ARATH; Protein REVEILLE 6
TrEMBLR0GMQ91e-179R0GMQ9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010445151.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-138MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]